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글번호 973
작성자 허진경
작성일 2019-09-23 15:59:05
제목 iris 데이터 실루엣 계수 확인하기
내용 iris 데이터 실루엣 계수 확인하기 소스코드
%matplotlib inline
%config InlineBackend.figure_format = 'retina'

from sklearn.cluster import KMeans
from sklearn.metrics import silhouette_samples, silhouette_score

import matplotlib.pyplot as plt
import matplotlib.cm as cm
import numpy as np

import seaborn as sns
iris = sns.load_dataset("iris")
iris_x = iris.loc[:, ["petal_length", "petal_width"] ]

range_n_clusters = [2, 3, 4, 5, 6]

for n_clusters in range_n_clusters:
    fig, (ax1, ax2) = plt.subplots(1, 2)
    fig.set_size_inches(12, 6)

#     ax1.set_xlim([-0.1, 1])
#     ax1.set_ylim([0, len(iris_x) + (n_clusters + 1) * 10])

    # 클러스터의 수만큼 KMeans 모형을 만들고 클러스터 레이블을 예측함
    clusterer = KMeans(n_clusters=n_clusters, random_state=10)
    cluster_labels = clusterer.fit_predict(iris_x)

    # 모든 샘플에 대한 실루엣 스코어 평균값을 계산함
    silhouette_avg = silhouette_score(iris_x, cluster_labels)
    print("For n_clusters =", n_clusters,
          "The average silhouette_score is :", silhouette_avg)

    # 각 셈플에 대해서 실루엣 스코어를 계산함
    sample_silhouette_values = silhouette_samples(iris_x, cluster_labels)
    
    y_lower = 10
    for i in range(n_clusters):
        ith_cluster_silhouette_values = sample_silhouette_values[cluster_labels == i]
        ith_cluster_silhouette_values.sort()

        size_cluster_i = ith_cluster_silhouette_values.shape[0]
        y_upper = y_lower + size_cluster_i

        color = cm.nipy_spectral(float(i) / n_clusters)
        ax1.fill_betweenx(np.arange(y_lower, y_upper),
                          0, ith_cluster_silhouette_values,
                          facecolor=color, edgecolor=color, alpha=0.7)

        # Label the silhouette plots with their cluster numbers at the middle
        ax1.text(-0.05, y_lower + 0.5 * size_cluster_i, str(i))

        # Compute the new y_lower for next plot
        y_lower = y_upper + 10  # 10 for the 0 samples

    ax1.set_title("The silhouette plot for the various clusters.")
    ax1.set_xlabel("The silhouette coefficient values")
    ax1.set_ylabel("Cluster label")

    # The vertical line for average silhouette score of all the values
    ax1.axvline(x=silhouette_avg, color="red", linestyle="--")

    ax1.set_yticks([])  # Clear the yaxis labels / ticks
    ax1.set_xticks([-0.1, 0, 0.2, 0.4, 0.6, 0.8, 1])

    # 2nd Plot showing the actual clusters formed
    colors = cm.nipy_spectral(cluster_labels.astype(float) / n_clusters)
    ax2.scatter(iris_x.iloc[:, 0], iris_x.iloc[:, 1], marker='.', s=30, lw=0, alpha=0.7,
                c=colors, edgecolor='k')

    # 클러스터 라벨링
    centers = clusterer.cluster_centers_
    # 클러스터 중앙에 태두리가 검정색인 하얀 원을 그림
    ax2.scatter(centers[:, 0], centers[:, 1], marker='o',
                c="white", alpha=1, s=200, edgecolor='k')

    for i, c in enumerate(centers):
        ax2.scatter(c[0], c[1], marker='$%d$' % i, alpha=1,
                    s=50, edgecolor='k')

    ax2.set_title("The visualization of the clustered data.")
    ax2.set_xlabel("Feature space for the 1st feature")
    ax2.set_ylabel("Feature space for the 2nd feature")

    plt.suptitle(("Silhouette analysis for KMeans clustering on sample data "
                  "with n_clusters = %d" % n_clusters),
                 fontsize=14, fontweight='bold')

    plt.show()